About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39221HEPACAM FAMILY MEMBER 2-RELATED
Paelopatides39222CONTACTIN 5
Paelopatides39223-
Paelopatides39224ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides39225PROTEIN CBG26694
Paelopatides39226INHIBITOR OF GROWTH PROTEIN
Paelopatides39227TRANSIENT RECEPTOR POTENTIAL CHANNEL
Paelopatides39228ACROSIN-RELATED
Paelopatides39230ANNEXIN
Paelopatides39231GENE, 17359-RELATED
Paelopatides39232-
Paelopatides39233-
Paelopatides39234DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides39235CERAMIDASE
Paelopatides39236CERAMIDASE
Paelopatides39237CERAMIDASE
Paelopatides39238CERAMIDASE
Paelopatides39243-
Paelopatides39244RETROTRANSPOSON
Paelopatides39245PHD-TYPE DOMAIN-CONTAINING PROTEIN
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