About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39246RETROTRANSPOSON
Paelopatides39247RETROTRANSPOSON
Paelopatides39248CERAMIDASE
Paelopatides39249-
Paelopatides39250TOLL-INTERACTING PROTEIN
Paelopatides39251-
Paelopatides39252RHO GTPASE-ACTIVATING PROTEIN 100F
Paelopatides39253RHO GTPASE-ACTIVATING PROTEIN 100F
Paelopatides39254METAL TRANSPORTER CNNM
Paelopatides39255METAL TRANSPORTER CNNM
Paelopatides39256DDB1- AND CUL4-ASSOCIATED FACTOR 10
Paelopatides3925726S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4
Paelopatides39258RING/U-BOX SUPERFAMILY PROTEIN
Paelopatides39259STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3
Paelopatides39260EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 9
Paelopatides39261TRANSMEMBRANE PROTEIN 127
Paelopatides39262BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN
Paelopatides39263ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39264-
Paelopatides39265-
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