About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39266DIHYDRODIPICOLINATE SYNTHASE
Paelopatides39267-
Paelopatides39268TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides39269AGAP004327-PA
Paelopatides39270-
Paelopatides39271AGAP004327-PA
Paelopatides39272-
Paelopatides39273ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
Paelopatides39274HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides39275-
Paelopatides39276-
Paelopatides39277CYTOKINE RECEPTOR
Paelopatides39278-
Paelopatides39279CYTOKINE RECEPTOR
Paelopatides39280PROTEIN SIDEKICK
Paelopatides39281-
Paelopatides39282ENDONUCLEASE
Paelopatides39283MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
Paelopatides39284RIBONUCLEASE
Paelopatides39285MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
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