About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40100TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED
Paelopatides40101TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED
Paelopatides40102ACETOACETYL-COA SYNTHETASE
Paelopatides40103UNCHARACTERIZED
Paelopatides40104UNCHARACTERIZED
Paelopatides40105MULTI-COPPER OXIDASE
Paelopatides40106CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED
Paelopatides40107EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
Paelopatides40108AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides40109-
Paelopatides40110REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED
Paelopatides40111REVERSE TRANSCRIPTASES
Paelopatides40112-
Paelopatides40113REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED
Paelopatides40114VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
Paelopatides40115ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40116-
Paelopatides40117-
Paelopatides40118-
Paelopatides40119PROTEIN CBG26694
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