About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41300REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41301-
Paelopatides41304-
Paelopatides41305ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides41306STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Paelopatides41307-
Paelopatides41308-
Paelopatides41309-
Paelopatides41310-
Paelopatides41311-
Paelopatides41312-
Paelopatides41313GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
Paelopatides41314-
Paelopatides41315UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides41316TETRASPANIN
Paelopatides41317-
Paelopatides41318LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1
Paelopatides41319LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1
Paelopatides41320MONOCARBOXYLATE TRANSPORTER
Paelopatides41321SERINE/THREONINE PROTEIN KINASE
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