About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41344LARVAL STORAGE PROTEIN/PHENOLOXIDASE
Paelopatides41345-
Paelopatides41346ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
Paelopatides41347-
Paelopatides41348-
Paelopatides41349-
Paelopatides41350CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Paelopatides41351-
Paelopatides41352E3 UBIQUITIN-PROTEIN LIGASE UBR5
Paelopatides41353PROTEIN ODR-4 HOMOLOG
Paelopatides41354PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides41355PROTEIN ODR-4 HOMOLOG
Paelopatides41356PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
Paelopatides41357PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
Paelopatides41358GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides41359GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides41360GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides41361GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides41362SOLUTE CARRIER FAMILY 52
Paelopatides41363SOLUTE CARRIER FAMILY 52
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