About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41322ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides41323BRIDGING INTEGRATOR 3
Paelopatides41324-
Paelopatides41325CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
Paelopatides41326-
Paelopatides41327MYB/SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN 4
Paelopatides41328-
Paelopatides41329-
Paelopatides41330-
Paelopatides41331PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides41332-
Paelopatides41335PROLINE-RICH EXTENSIN-LIKE
Paelopatides41336ENDONUCLEASE-RELATED
Paelopatides41337-
Paelopatides41338-
Paelopatides41339FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41340TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides41341ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides41342MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides41343ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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