About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41824-
Paelopatides41825ATP-DEPENDENT DNA HELICASE
Paelopatides41826ATP-DEPENDENT DNA HELICASE
Paelopatides41827QUINONE OXIDOREDUCTASE-LIKE PROTEIN 1
Paelopatides41828-
Paelopatides41829OS01G0948300 PROTEIN
Paelopatides41830TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG
Paelopatides41831CS DOMAIN-CONTAINING PROTEIN
Paelopatides41832ADP RIBOSYLATION FACTOR-RELATED
Paelopatides41833ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides41834MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides41835-
Paelopatides41836REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41837ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides4183828S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL
Paelopatides41839PRE-MRNA SPLICING FACTOR PRP31
Paelopatides41841-
Paelopatides41842-
Paelopatides41843N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Paelopatides41844PROTEIN CBG26694
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