About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41845PROTEIN CBG26694
Paelopatides41846PROTEIN CBG26694
Paelopatides41847MALIC ENZYME-RELATED
Paelopatides41848NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN
Paelopatides41849FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41850N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides41851SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides41852SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides41853-
Paelopatides41854-
Paelopatides41855-
Paelopatides41856RETROTRANSPOSON
Paelopatides41857-
Paelopatides41858-
Paelopatides41859PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides41860-
Paelopatides41861ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides41862TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides41863-
Paelopatides41864SI:CH211-171H4.7-RELATED
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