About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41865SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
Paelopatides41866MYC PROTO-ONCOGENE
Paelopatides41867-
Paelopatides41868TRNA DIMETHYLALLYLTRANSFERASE
Paelopatides41869-
Paelopatides41870PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides41871-
Paelopatides41872-
Paelopatides41873LIPID PHOSPHATE PHOSPHATASE
Paelopatides41874-
Paelopatides41875-
Paelopatides41876GLUCOSE INHIBITED DIVISION PROTEIN A
Paelopatides41877EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
Paelopatides41878INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Paelopatides41879-
Paelopatides41880DNA POLYMERASE
Paelopatides41881SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 1
Paelopatides41882OXYGENASE-RELATED
Paelopatides41883PROTEIN CBG26694
Paelopatides41884-
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