About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10989PROTEIN CBG26694
Clavulariidae_g1099DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10990SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10991ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10992
Clavulariidae_g10993ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10994DNA HELICASE-RELATED
Clavulariidae_g10995
Clavulariidae_g10996SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10997
Clavulariidae_g10998DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g10999DNA HELICASE-RELATED
Clavulariidae_g11SYNAPTOTAGMIN
Clavulariidae_g110-
Clavulariidae_g1100
Clavulariidae_g11000TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11001
Clavulariidae_g11002
Clavulariidae_g11003FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g11004
Clavulariidae_g11005
Clavulariidae_g11006
Clavulariidae_g11007ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g11008HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11009PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1101THAP DOMAIN PROTEIN
Clavulariidae_g11010REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11011ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11012PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11013RETROTRANSPOSON
Clavulariidae_g11014
Clavulariidae_g11015THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11016
Clavulariidae_g11017SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11018ZGC:195170
Clavulariidae_g11019
Clavulariidae_g1102REVERSE TRANSCRIPTASES
Clavulariidae_g11020REVERSE TRANSCRIPTASES
Clavulariidae_g11021RETROTRANSPOSON
Clavulariidae_g11022C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11023AP ENDONUCLEASE
Clavulariidae_g11024
Clavulariidae_g11025
Clavulariidae_g11026REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11027L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11028REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11029
Clavulariidae_g1103PROTEIN CBG26694
Clavulariidae_g11030
Clavulariidae_g11031
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