About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43698-
Paelopatides43699DUF614 FAMILY PROTEIN-RELATED
Paelopatides43700-
Paelopatides43701BCS1 AAA-TYPE ATPASE
Paelopatides43702-
Paelopatides43703GLYCOSYLTRANSFERASE
Paelopatides43704REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43705NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER
Paelopatides43706PROSTAGLANDIN REDUCTASE
Paelopatides43707-
Paelopatides43708N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides43709-
Paelopatides43710-
Paelopatides43711TRANSPOSASE, PUTATIVE-RELATED
Paelopatides43712-
Paelopatides43713DNA REPAIR/RNA PROCESSING CPSF FAMILY
Paelopatides43714DNA REPAIR/RNA PROCESSING CPSF FAMILY
Paelopatides43715DNA REPAIR/RNA PROCESSING CPSF FAMILY
Paelopatides43716REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43717INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
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