About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43738-
Paelopatides43739ACROSIN-RELATED
Paelopatides43740COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides43741-
Paelopatides43742FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43743EXPRESSED PROTEIN
Paelopatides43744-
Paelopatides43745-
Paelopatides43746SULFOTRANSFERASE SULT
Paelopatides43747PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43748COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
Paelopatides43749-
Paelopatides43750REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43751TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Paelopatides43752ZINC FINGER PROTEIN 200
Paelopatides43753-
Paelopatides4375452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides43755-
Paelopatides43756NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides43757-
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