About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43839SI:CH211-108C17.2-RELATED-RELATED
Paelopatides43840-
Paelopatides43841ATP-DEPENDENT DNA HELICASE
Paelopatides43842PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
Paelopatides43843CRANIOFACIAL DEVELOPMENT PROTEIN 1
Paelopatides43844CALCIUM BINDING PROTEIN
Paelopatides43845-
Paelopatides43846FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43847MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
Paelopatides43849EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides43850EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides43851ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides43852EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides43853CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43854DNA2/NAM7 HELICASE FAMILY MEMBER
Paelopatides43855-
Paelopatides43856UNCHARACTERIZED HYPOTHALAMUS PROTEIN HT007
Paelopatides43857FL(2)D-ASSOCIATED COMPLEX COMPONENT
Paelopatides43858FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43859-
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