About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43880HISTONE H2B
Paelopatides43881HISTONE H4
Paelopatides43882HISTONE H3
Paelopatides43883HISTONE H2A
Paelopatides43884-
Paelopatides43885-
Paelopatides43886-
Paelopatides43887HISTONE H2B
Paelopatides43888HISTONE H4
Paelopatides43889HISTONE H3
Paelopatides43890HISTONE H2A
Paelopatides43891HISTONE H2B
Paelopatides43892RETROTRANSPOSON
Paelopatides43893PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43894PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43895ZINC FINGER PROTEIN
Paelopatides43896CARBOHYDRATE SULFOTRANSFERASE
Paelopatides43897CARBOHYDRATE SULFOTRANSFERASE
Paelopatides43898SYNAPTIC VESICLE GLYCOPROTEIN 2
Paelopatides43899HYR DOMAIN-CONTAINING PROTEIN
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