About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44130-
Paelopatides44131-
Paelopatides44132ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides44133ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides44134-
Paelopatides44135PROTEIN FAM47B
Paelopatides44136FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides44137-
Paelopatides44138XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides44139GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
Paelopatides44140GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
Paelopatides44141GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
Paelopatides44142FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44143PROTEIN CBG16428
Paelopatides44144-
Paelopatides44145SLR5058 PROTEIN
Paelopatides44146REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44147-
Paelopatides44148RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN
Paelopatides44149RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN
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