About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44150RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN
Paelopatides44151-
Paelopatides44152-
Paelopatides44153-
Paelopatides44154S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides44155S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides44156HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides44157-
Paelopatides44158-
Paelopatides44159MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
Paelopatides44160MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
Paelopatides4416130S RIBOSOMAL PROTEIN S12 FAMILY MEMBER
Paelopatides44162REPETIN
Paelopatides44163GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides44164NXPE FAMILY MEMBER
Paelopatides44165EPM2A-INTERACTING PROTEIN 1
Paelopatides44166GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides44167-
Paelopatides44169BTB POZ DOMAIN CONTAINING 12
Paelopatides44170BTB POZ DOMAIN CONTAINING 12
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