About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44284ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44285-
Paelopatides44286-
Paelopatides44287SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides44288PROTEIN EVA-1
Paelopatides44289PROTEIN, PUTATIVE-RELATED
Paelopatides44290BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides44291ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides44292TRANSPOSON
Paelopatides44293-
Paelopatides44294-
Paelopatides44295E3 UBIQUITIN-PROTEIN LIGASE MIB2
Paelopatides44296RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides44297-
Paelopatides44298PHEROMONE SHUTDOWN PROTEIN
Paelopatides44299REELIN
Paelopatides44300REELIN
Paelopatides44301ORIGIN RECOGNITION COMPLEX SUBUNIT 5
Paelopatides44302RNA METHYLTRANSFERASE
Paelopatides44303OLIGOPEPTIDE TRANSPORTER-RELATED
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