About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44324HOMOGENTISATE 1,2-DIOXYGENASE
Paelopatides44325RWD DOMAIN-CONTAINING PROTEIN
Paelopatides44327PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides44328ANKYRIN REPEAT PROTEIN
Paelopatides44329-
Paelopatides44330PROTEIN CBG26694
Paelopatides44331TESTIS EXPRESSED 11
Paelopatides44332-
Paelopatides44333-
Paelopatides44334APOPTOGENIC PROTEIN 1, MITOCHONDRIAL
Paelopatides44335TESTIS-EXPRESSED PROTEIN 11
Paelopatides44336PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides44337-
Paelopatides44338PIKACHURIN-LIKE PROTEIN
Paelopatides44339-
Paelopatides44340CELL DIVISION PROTEIN KINASE
Paelopatides44341-
Paelopatides44342UNCHARACTERIZED
Paelopatides44343ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides44344REVERSE TRANSCRIPTASES
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