About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44304FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44305FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44306REVERSE TRANSCRIPTASES
Paelopatides44307F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44308-
Paelopatides44309FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44310REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44311BUCENTAUR RELATED
Paelopatides44312REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44313PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides44314GTP-BINDING
Paelopatides44315REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44316FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44317-
Paelopatides44318-
Paelopatides44319RETINOIC ACID-INDUCED PROTEIN 2
Paelopatides44320P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN
Paelopatides44321P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN
Paelopatides44322-
Paelopatides44323NADPH OXIDASE
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