About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44386-
Paelopatides44387CYTOCHROME P450 508A4-RELATED
Paelopatides44388-
Paelopatides44389ATP-DEPENDENT DNA HELICASE
Paelopatides44390L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides44391-
Paelopatides44392CALCIUM-BINDING PROTEIN 8-RELATED
Paelopatides44393SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44394G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides44395ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides44396ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides44397-
Paelopatides44398NETRIN RECEPTOR UNC5
Paelopatides44399-
Paelopatides44400-
Paelopatides44401SCAVENGER RECEPTOR CLASS F
Paelopatides44402REVERSE TRANSCRIPTASES
Paelopatides44403-
Paelopatides44404ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44405PROTEIN CBG26694
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