About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44528THYMIDYLATE SYNTHASE 1
Paelopatides44529THYMIDYLATE SYNTHASE 1
Paelopatides44530THYMIDYLATE SYNTHASE 1
Paelopatides44531-
Paelopatides44532-
Paelopatides44533TETRATRICOPEPTIDE REPEAT PROTEIN 12
Paelopatides44534-
Paelopatides44535-
Paelopatides44536-
Paelopatides44537-
Paelopatides44538REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44539BUCENTAUR RELATED
Paelopatides44540ALPHA-MANNOSIDASE
Paelopatides44541PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides44542GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides44543PITUITARY HOMEOBOX HOMOLOG PTX1
Paelopatides44544PITUITARY HOMEOBOX HOMOLOG PTX1
Paelopatides44545REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44546BUCENTAUR RELATED
Paelopatides44547AGAP005574-PA
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