About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44905-
Paelopatides44906-
Paelopatides44907-
Paelopatides44908-
Paelopatides44909-
Paelopatides44910ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides44911REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44912-
Paelopatides44913-
Paelopatides44914L-GULONOLACTONE OXIDASE
Paelopatides44915UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides44916-
Paelopatides44917VPRBP PROTEIN-RELATED
Paelopatides44918-
Paelopatides44919VPRBP PROTEIN-RELATED
Paelopatides44920TRANSMEMBRANE PROTEIN 121B
Paelopatides44921TRANSMEMBRANE PROTEIN 121B
Paelopatides44922ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides44923NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
Paelopatides44924ADHESION G-PROTEIN COUPLED RECEPTOR
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