About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44945GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides44946ENDONUCLEASE
Paelopatides44947HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED
Paelopatides44948PROTEIN CBG26694
Paelopatides44949PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides44950-
Paelopatides44951FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44952TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
Paelopatides44953-
Paelopatides44954SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44955ELECTRON TRANSFER FLAVOPROTEIN ALPHA
Paelopatides44956-
Paelopatides44957FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides44958-
Paelopatides44959ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides44960EPM2A-INTERACTING PROTEIN 1
Paelopatides44961EG:EG0003.4 PROTEIN-RELATED
Paelopatides44962-
Paelopatides44963-
Paelopatides44964EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1
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