About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44925PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides44926PROTEIN CBG26694
Paelopatides44927EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides44928CADHERIN-23
Paelopatides44929-
Paelopatides44930-
Paelopatides44931CAMK FAMILY PROTEIN KINASE
Paelopatides44932-
Paelopatides44933-
Paelopatides44934SORBITOL DEHYDROGENASE
Paelopatides44935REVERSE TRANSCRIPTASE
Paelopatides44936-
Paelopatides44937-
Paelopatides44938ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides44939SI:CH211-196P9.1-RELATED
Paelopatides44940PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides44941-
Paelopatides44942-
Paelopatides44943-
Paelopatides44944FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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