About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides44986C1ORF189
Paelopatides44987SEMAPHORIN
Paelopatides44988DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides44989ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides44990ATP-DEPENDENT DNA HELICASE
Paelopatides44991-
Paelopatides44992ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides44993BUCENTAUR RELATED
Paelopatides44994REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides44995ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides44996-
Paelopatides44997-
Paelopatides44998-
Paelopatides44999ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides45000TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides45001ENDONUCLEASE-RELATED
Paelopatides45002ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides45003ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides45004-
Paelopatides45005PROTEIN CBG26694
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