About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45006-
Paelopatides45007PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides45008ADENYLOSUCCINATE SYNTHETASE
Paelopatides45009SCAVENGER RECEPTOR CLASS F
Paelopatides45010BONUS, ISOFORM C-RELATED
Paelopatides45011HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides45012-
Paelopatides45013ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN
Paelopatides45014ZGC:153157
Paelopatides45015MULTIPLE PDZ DOMAIN PROTEIN
Paelopatides45016-
Paelopatides45017SI:CH211-196P9.1-RELATED
Paelopatides45018CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
Paelopatides45019CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
Paelopatides45020PROTEIN CBG21859
Paelopatides45021MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides45022THIOPURINE S-METHYLTRANSFERASE
Paelopatides45023-
Paelopatides45024-
Paelopatides45025POL PROTEIN
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