About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45046REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45047PROTEASE M1 ZINC METALLOPROTEASE
Paelopatides45048LATROPHILIN RECEPTOR-LIKE PROTEIN A
Paelopatides45049SCAVENGER RECEPTOR DOMAIN-CONTAINING
Paelopatides45050PROTEIN CBG26694
Paelopatides45051-
Paelopatides45052-
Paelopatides45053LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides45054CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides45055PIKACHURIN-LIKE PROTEIN
Paelopatides45056GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2
Paelopatides45057-
Paelopatides45058FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides45059-
Paelopatides45060LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73
Paelopatides45061-
Paelopatides45062TYROSINE-PROTEIN KINASE
Paelopatides45063-
Paelopatides45064PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides45065ZINC FINGER AND SCAN DOMAIN-CONTAINING
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