About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides451472,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
Paelopatides45148ALPHA-TECTORIN-RELATED
Paelopatides45149EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides45150-
Paelopatides45152PA-PL1 PHOSPHOLIPASE FAMILY
Paelopatides45153PA-PL1 PHOSPHOLIPASE FAMILY
Paelopatides45154PA-PL1 PHOSPHOLIPASE FAMILY
Paelopatides45155RING ZINC FINGER PROTEIN
Paelopatides45156NEURALIZED
Paelopatides45157NEURALIZED
Paelopatides45158-
Paelopatides45159CONDENSIN
Paelopatides45160CONDENSIN
Paelopatides45161ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides45162ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides45163CONDENSIN
Paelopatides45164-
Paelopatides45165RETROTRANSPOSON
Paelopatides45166RETROTRANSPOSON
Paelopatides45167THADA/DEATH RECEPTOR INTERACTING PROTEIN
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