About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45106-
Paelopatides45107TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides45108ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45109DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
Paelopatides45110TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides45111PROLINE OXIDASE
Paelopatides45112CENTLEIN
Paelopatides45113-
Paelopatides45115CENTLEIN
Paelopatides45116-
Paelopatides45117DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS
Paelopatides45118-
Paelopatides45119COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
Paelopatides45120TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides45121BTB/POZ DOMAIN-CONTAINING
Paelopatides45122BTB/POZ DOMAIN-CONTAINING
Paelopatides45123APOSPORY-ASSOCIATED PROTEIN C-RELATED
Paelopatides45124MACROGLOBULIN / COMPLEMENT
Paelopatides45125DIPHTHINE METHYLTRANSFERASE
Paelopatides45126PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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