About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45086-
Paelopatides45087EXPRESSED PROTEIN
Paelopatides45088BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
Paelopatides45089REVERSE TRANSCRIPTASES
Paelopatides45090MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
Paelopatides45091MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides45092PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
Paelopatides45093MACROGLOBULIN / COMPLEMENT
Paelopatides45094-
Paelopatides45095INVERTED FORMIN-2
Paelopatides45096INVERTED FORMIN-2
Paelopatides45097PROTEIN CBG26694
Paelopatides45098-
Paelopatides45099-
Paelopatides45100PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
Paelopatides45101PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
Paelopatides45102ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides45103POL PROTEIN
Paelopatides45104NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides45105-
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