About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11078
Clavulariidae_g11079
Clavulariidae_g1108
Clavulariidae_g11080
Clavulariidae_g11081
Clavulariidae_g11082REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11083
Clavulariidae_g11084
Clavulariidae_g11085CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11086
Clavulariidae_g11087
Clavulariidae_g11088THAP DOMAIN PROTEIN
Clavulariidae_g11089
Clavulariidae_g1109SNAC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11090REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11091PUTATIVE-RELATED
Clavulariidae_g11092
Clavulariidae_g11093
Clavulariidae_g11094EXPRESSED PROTEIN
Clavulariidae_g11095
Clavulariidae_g11096C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11097
Clavulariidae_g11098PROTEIN CBG26694
Clavulariidae_g11099
Clavulariidae_g111NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g1110PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11100
Clavulariidae_g11101
Clavulariidae_g11102
Clavulariidae_g11103RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11104
Clavulariidae_g11105PROTEIN CBG23806
Clavulariidae_g11106ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11107
Clavulariidae_g11108SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11109
Clavulariidae_g1111CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11110
Clavulariidae_g11111REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11112
Clavulariidae_g11113RETROTRANSPOSON
Clavulariidae_g11114GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Clavulariidae_g11115
Clavulariidae_g11116DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11117
Clavulariidae_g11118
Clavulariidae_g11119
Clavulariidae_g1112CHROMOBOX PROTEIN
Clavulariidae_g11120PROTEIN CBG26694
Clavulariidae_g11121PROTEIN CBG26694
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