About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11032PROTEIN CBG23764
Clavulariidae_g11033COLLAGEN ALPHA
Clavulariidae_g11034
Clavulariidae_g11035PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11036
Clavulariidae_g11037
Clavulariidae_g11038EPM2A-INTERACTING PROTEIN 1
Clavulariidae_g11039SNAC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1104PROTEIN CBG26694
Clavulariidae_g11040PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11041REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11042REVERSE TRANSCRIPTASES
Clavulariidae_g11043
Clavulariidae_g11044
Clavulariidae_g11045C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11046SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11047C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11048-
Clavulariidae_g11049
Clavulariidae_g1105
Clavulariidae_g11050
Clavulariidae_g11051
Clavulariidae_g11052RETROTRANSPOSON
Clavulariidae_g11053
Clavulariidae_g11054PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11055
Clavulariidae_g11056PROTEIN CBG23806
Clavulariidae_g11057-
Clavulariidae_g11058REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11059REVERSE TRANSCRIPTASES
Clavulariidae_g1106
Clavulariidae_g11060ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11061UNCHARACTERIZED
Clavulariidae_g11062
Clavulariidae_g11063
Clavulariidae_g11064F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11065
Clavulariidae_g11066
Clavulariidae_g11067
Clavulariidae_g11068ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11069REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1107
Clavulariidae_g11070
Clavulariidae_g11071
Clavulariidae_g11072REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11073
Clavulariidae_g11074
Clavulariidae_g11075
Clavulariidae_g11076
Clavulariidae_g11077OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
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