About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06092PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN
Paelopatides06093PYRIDOXAL KINASE
Paelopatides06094PYRIDOXAL KINASE
Paelopatides06095REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06096RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides06097MONOCARBOXYLATE TRANSPORTER
Paelopatides06098CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED
Paelopatides06099ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06100INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Paelopatides06101CDC42 GTPASE-ACTIVATING PROTEIN
Paelopatides06102POL PROTEIN
Paelopatides06103TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides06104REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06105L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06106G-PROTEIN COUPLED RECEPTOR 89-RELATED
Paelopatides06107GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides06108ENZYMATIC POLYPROTEIN-RELATED
Paelopatides06109ENDONUCLEASE-RELATED
Paelopatides06110REVERSE TRANSCRIPTASES
Paelopatides06111CXC DOMAIN-CONTAINING PROTEIN-RELATED
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