About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06154ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06155MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS
Paelopatides06156TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides06157-
Paelopatides06158N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides06159-
Paelopatides06160SI:CH211-196P9.1-RELATED
Paelopatides06161IP13529P
Paelopatides06162EPM2A-INTERACTING PROTEIN 1
Paelopatides06163REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06164MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED
Paelopatides06165-
Paelopatides06166-
Paelopatides06167DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides06168COILED-COIL DOMAIN-CONTAINING PROTEIN 60
Paelopatides06169INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides06170INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides06171-
Paelopatides06172WD40 REPEAT PROTEIN
Paelopatides06173SPERM ACROSOME-ASSOCIATED PROTEIN 9
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