About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06133-
Paelopatides06134GTP-BINDING
Paelopatides06135GTP-BINDING
Paelopatides06136-
Paelopatides06137-
Paelopatides06138GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides06139PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides06140ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06141POL PROTEIN
Paelopatides06142ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides06143SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides06144PROTEIN CBG26694
Paelopatides06145PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides06146PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides06147RETROTRANSPOSON
Paelopatides06148PROTEIN CBG26694
Paelopatides06149-
Paelopatides06151REVERSE TRANSCRIPTASE
Paelopatides06152ARCHAEMETZINCIN
Paelopatides06153-
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