About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06174-
Paelopatides06175INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E
Paelopatides06176ANAPHASE-PROMOTING COMPLEX SUBUNIT 5
Paelopatides06177GLUTAMINE SYNTHETASE
Paelopatides061785-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides06179-
Paelopatides06180LIPASE
Paelopatides06181-
Paelopatides06182DNA LIGASE
Paelopatides06184-
Paelopatides06185MONOCARBOXYLATE TRANSPORTER
Paelopatides06186TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides06187TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides06190SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06191-
Paelopatides06192-
Paelopatides06195ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06196-
Paelopatides06197-
Paelopatides06198ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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