About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06220DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides06221THAP DOMAIN-CONTAINING PROTEIN 6
Paelopatides06222REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06223PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06224-
Paelopatides06225ZINC FINGER PROTEIN
Paelopatides06226ENDONUCLEASE-RELATED
Paelopatides06227-
Paelopatides06228-
Paelopatides06229TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides06230ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06231ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06232SWAP-70 RECOMBINASE
Paelopatides06233PYRUVATE CARBOXYLASE
Paelopatides06234MYOTROPHIN
Paelopatides06235VEPH-A/MELTED
Paelopatides06236SAM DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06237L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06238-
Paelopatides06240PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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