About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06759-
Paelopatides06760REVERSE TRANSCRIPTASES
Paelopatides06761ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06762RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG
Paelopatides06763EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1
Paelopatides06764PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides06765-
Paelopatides06766-
Paelopatides06767EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides06768PROTEIN CBG26694
Paelopatides06769OVOCHYMASE-RELATED
Paelopatides06770CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides06771-
Paelopatides06772-
Paelopatides06773-
Paelopatides06774-
Paelopatides06775ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides06776-
Paelopatides06777TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Paelopatides06778MOLTING PROTEIN MLT-4
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