About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06672UNCHARACTERIZED
Paelopatides06673-
Paelopatides06674RETROTRANSPOSON
Paelopatides06676REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06677-
Paelopatides06678MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Paelopatides06679-
Paelopatides06680RETROTRANSPOSON
Paelopatides06681RETROTRANSPOSON
Paelopatides06682ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06683-
Paelopatides06684PROTEIN CBG17025
Paelopatides06685-
Paelopatides06686RIBOSOMAL PROTEIN L30
Paelopatides06687CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06688TRANSPOSON
Paelopatides06689DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides06690DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides06691HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides06693-
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