About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06735ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV
Paelopatides06736-
Paelopatides06737PROTEIN CBG26694
Paelopatides06738PHOSPHOLIPASE D - RELATED
Paelopatides06743REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06744-
Paelopatides06745TRANSPOSASE, PUTATIVE-RELATED
Paelopatides06746TRANSPOSASE, PUTATIVE-RELATED
Paelopatides06747TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides06748REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06749METHYLTRANSFERASE TYPE 11
Paelopatides06750TYROSINE-PROTEIN PHOSPHATASE
Paelopatides06751SNF5
Paelopatides06752NEP1/MRA1
Paelopatides06753LEYDIG CELL TUMOR 10 KDA PROTEIN HOMOLOG
Paelopatides06754RETROTRANSPOSON
Paelopatides06755RWD DOMAIN-CONTAINING PROTEIN 3
Paelopatides06756OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides06757-
Paelopatides06758-
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