About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06632-
Paelopatides06633SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides06634-
Paelopatides06635SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06636SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06637SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06638N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides06639-
Paelopatides06640-
Paelopatides06641-
Paelopatides06642-
Paelopatides06643POL PROTEIN
Paelopatides06644ENDONUCLEASE-RELATED
Paelopatides06645REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06646PURPLE ACID PHOSPHATASE
Paelopatides06647-
Paelopatides06648-
Paelopatides06649ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06650ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06651SOLUTE CARRIER FAMILY 22 MEMBER
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