About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06694SI:CH211-196P9.1-RELATED
Paelopatides06695FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides06696ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06697DNA REPAIR/RNA PROCESSING CPSF FAMILY
Paelopatides06698UNNAMED PRODUCT
Paelopatides06699MSF1/PX19 RELATED
Paelopatides06700-
Paelopatides06701TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED
Paelopatides06702POL PROTEIN
Paelopatides06703-
Paelopatides06705PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06706HOMEOBOX PROTEIN ABDOMINAL-B
Paelopatides06707-
Paelopatides06708-
Paelopatides06709MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Paelopatides06710REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06711STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN
Paelopatides06712UNCHARACTERIZED
Paelopatides06713-
Paelopatides06714GTP-BINDING
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