About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07683-
Paelopatides07684PROTEIN CBG26694
Paelopatides07685ENZYMATIC POLYPROTEIN-RELATED
Paelopatides07686-
Paelopatides07687-
Paelopatides07688-
Paelopatides07689PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides07690-
Paelopatides07691RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides07692AP ENDONUCLEASE
Paelopatides07693-
Paelopatides07694RH14732P
Paelopatides07695METHYLTRANSFERASE
Paelopatides07696MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Paelopatides07697T-CELL SURFACE GLYCOPROTEIN CD4
Paelopatides07698TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides07699PROTEIN CBG26694
Paelopatides07700-
Paelopatides07701-
Paelopatides07702KELCH PROTEIN
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