About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07744-
Paelopatides07745-
Paelopatides07746-
Paelopatides07747-
Paelopatides077482'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1
Paelopatides07749MAD2L1-BINDING PROTEIN
Paelopatides07750KREV INTERACTION TRAPPED 1-RELATED
Paelopatides07751-
Paelopatides07752NUCLEOLUS AND NEURAL PROGENITOR PROTEIN
Paelopatides07753UNCHARACTERIZED
Paelopatides07754REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07755UNCHARACTERIZED
Paelopatides07756REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07757UNCHARACTERIZED
Paelopatides07758-
Paelopatides07759OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides07760-
Paelopatides07761ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07762REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07763SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
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