About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides0797652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides07977ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07978ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER
Paelopatides07979RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides07980ENDONUCLEASE
Paelopatides07981INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Paelopatides07982-
Paelopatides07983BETA LACTAMASE DOMAIN
Paelopatides07984-
Paelopatides07985-
Paelopatides07986POL PROTEIN
Paelopatides07987ENDONUCLEASE-RELATED
Paelopatides07988PROTEIN CBG26694
Paelopatides07989-
Paelopatides07990URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
Paelopatides07991FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides07992ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides07993LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
Paelopatides07994ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07995ADHESION G PROTEIN-COUPLED RECEPTOR G7
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