About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07849-
Paelopatides07850ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07851CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07852PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides07853OPSIN
Paelopatides07854RETROTRANSPOSON
Paelopatides07855PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides07857-
Paelopatides07858ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides07859ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides07860POL PROTEIN
Paelopatides07861CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07862-
Paelopatides078635'-NUCLEOTIDASE-RELATED
Paelopatides07864-
Paelopatides0786552 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides07866TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides07867OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides07868-
Paelopatides07869-
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