About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07913REVERSE TRANSCRIPTASES
Paelopatides07914BUCENTAUR RELATED
Paelopatides07915-
Paelopatides07916PROTEIN SIDEKICK
Paelopatides07917-
Paelopatides07918CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07921TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides07922ENDONUCLEASE
Paelopatides07923ENDONUCLEASE
Paelopatides07924ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07925-
Paelopatides07926GTP-BINDING
Paelopatides07927GTP-BINDING
Paelopatides07928MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F
Paelopatides07929-
Paelopatides07930TELOMERIC REPEAT-BINDING FACTOR 1 TERF1
Paelopatides07931FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides07932SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides07933-
Paelopatides07934-
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