About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08720OPSIN
Paelopatides08721B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides08722B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides08723-
Paelopatides08724FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides08725PROTEIN CBG26694
Paelopatides08726(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME
Paelopatides08727ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Paelopatides08728-
Paelopatides08729RETROTRANSPOSON
Paelopatides08730PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides08732POL PROTEIN
Paelopatides08733-
Paelopatides08734POL PROTEIN
Paelopatides08737INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08738TRANSPOSASE, PUTATIVE-RELATED
Paelopatides08739-
Paelopatides08740-
Paelopatides08741PROTEIN CBG26694
Paelopatides08743CXC DOMAIN-CONTAINING PROTEIN-RELATED
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