Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s060.g0042.t1 | |
Lsat_s060.g0043.t1 | |
Lsat_s060.g0044.t1 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
Lsat_s060.g0045.t1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
Lsat_s060.g0046.t1 | |
Lsat_s060.g0047.t1 | TETRASPANIN |
Lsat_s060.g0048.t1 | TETRASPANIN |
Lsat_s060.g0049.t1 | APOPTOSIS INHIBITOR 5-RELATED |
Lsat_s060.g0050.t1 | RUVB-RELATED REPTIN AND PONTIN |
Lsat_s060.g0051.t1 | TROPONIN I |
Lsat_s060.g0052.t1 | TROPONIN T |
Lsat_s060.g0053.t1 | |
Lsat_s060.g0054.t1 | OXYSTEROL-BINDING PROTEIN-RELATED |
Lsat_s060.g0055.t1 | AGAP001331-PA-RELATED |
Lsat_s060.g0056.t1 | |
Lsat_s060.g0057.t1 | GLYCOSYLTRANSFERASE |
Lsat_s060.g0058.t1 | PAXILLIN-RELATED |
Lsat_s060.g0059.t1 | |
Lsat_s060.g0060.t1 | |
Lsat_s060.g0061.t1 | |
Lsat_s060.g0062.t1 | ZINC FINGER PROTEIN |
Lsat_s060.g0063.t1 | |
Lsat_s060.g0064.t1 | - |
Lsat_s060.g0065.t1 | |
Lsat_s060.g0066.t1 | NEUROPEPTIDE-LIKE PROTEIN-RELATED |
Lsat_s060.g0067.t1 | |
Lsat_s060.g0068.t1 | SUPPRESSOR OF TY 5 |
Lsat_s060.g0069.t1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI |
Lsat_s060.g0070.t1 | TNF RECEPTOR ASSOCIATED FACTOR |
Lsat_s060.g0071.t1 | GPI MANNOSYLTRANSFERASE 2 |
Lsat_s060.g0072.t1 | SERINE/THREONINE-PROTEIN KINASE PLK |
Lsat_s060.g0073.t1 | G PATCH DOMAIN CONTAINING PROTEIN |
Lsat_s060.g0074.t1 | VINCULIN |
Lsat_s060.g0075.t1 | |
Lsat_s060.g0076.t1 | VINCULIN |
Lsat_s060.g0077.t1 | UNCHARACTERIZED |
Lsat_s060.g0078.t1 | PROTEIN CBG03580 |
Lsat_s060.g0079.t1 | |
Lsat_s060.g0080.t1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
Lsat_s060.g0081.t1 | STAC |
Lsat_s060.g0082.t1 | FORKHEAD BOX PROTEIN N1 |
Lsat_s060.g0083.t1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
Lsat_s060.g0084.t1 | CD59 GLYCOPROTEIN |
Lsat_s060.g0085.t1 | |
Lsat_s060.g0086.t1 | CD59 GLYCOPROTEIN |
Lsat_s060.g0087.t1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
Lsat_s060.g0088.t1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
Lsat_s060.g0089.t1 | ACETYL-COA C-ACYLTRANSFERASE |
Lsat_s060.g0090.t1 | FORKHEAD BOX PROTEIN |
Lsat_s060.g0091.t1 | AMMONIUM TRANSPORTER |